Wikispecies

User:Christian Ferrer/miscellaneous

< User:Christian Ferrer

Test

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Must see

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  • Ophiacantha cuspidata Lyman, 1878 synonymized with Ophiacantha anomala G.O. Sars, 1872 by Martynov & Litvinova (2008) p. 91

Plazi

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WoRMS

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  • ?Olbers et al. (2019) as a new combination reference for Ophiura indica? → Olbers et al. (2019) don't seems to talk at all about this species.
  • Lacking record(s):
    • Pectinura spinosa (Ljungman, 1867) Lyman, 1874: 221 → Ophiopeza spinosa
    • Ophiolepis squamata (Delle Chiaje, 1828) Müller & Troschel, 1842: 92 → Amphipholis squamata
    • Linckia pacifica var. diplax (Müller & Troschel, 1842); — Sladen, 1889: 410 → original combination: Ophidiaster diplax Müller & Troschel, 1842 → Linckia guildingi Gray, 1840
    • Gnathaster paxillosus (Gray, 1847) Sladen, 1889: 286 → Diplodontias paxillosus (Gray, 1847)
    • Gnathaster miliaris (Gray, 1847) Sladen, 1889: 286 → Diplodontias miliaris (Gray, 1847)
    • Stereocidaris canaliculata (A. Agassiz, 1863) Mortensen, 1903: 25–26 → Austrocidaris canaliculata
    • †Chondrocidaris compta (Philip, 1964), origin. comb.= †Menocidaris compta Philip, 1964 (WoRMS), genus stated as synonymy of Chondrocidaris, and recombination quoted in The Echinoid Directory
    • Cidaris micans (Mortensen, 1903) H.L. Clark, 1925: 19 → Calocidaris micans
    • Amphiacantha gastracantha (Lütken & Mortensen, 1899) Matsumoto, 1917: 178 → Dougaloplus gastracanthus
    • Amphiacantha notacantha (Lütken & Mortensen, 1899) Matsumoto, 1917: 178 → Dougaloplus notacanthus
    • Ophiosphalma breve (H.L. Clark, 1939) Baker, 2016: 27 → Ophiomusa breve
    • Ophioglypha verrucosa (Studer, 1876) Studer, 1882: 14–15 → Ophiura verrucosa
    • Amphiophiura aspera (Koehler, 1898) H.L. Clark, 1915: 314 → Ophiura saurura
    • Ophiura aspera (Koehler, 1898) Matsumoto, 1915: 81 → Ophiura saurura
    • Ophiozea robusta (Ayres, 1852) A.H. Clark, 1920: 6 → Ophiura robusta
    • Ophioglypha lacertosa Lyman, 1865 [recombination of pre-Linnean taxon Stella lacertosa Linck, 1733: 47–48] → Ophiura ophiura
    • Ophiura thouleti (Koehler, 1895) Meissner, 1901: 925 → Ophiura ljungmani
    • Homalophiura flexibilis (Koehler, 1911) H.L. Clark, 1915: 326 → Ophiura flexibilis
    • Homalophiura rouchi (Koehler, 1912) H.L. Clark, 1915: 327 → Ophiura rouchi
    • Ophioglypha carnea (M. Sars in Lütken, 1858) Lyman, 1865: 10 → Ophiura carnea
    • Ophioglypha abyssicola (Forbes, 1843) Ljungman, 1867: 307 → Ophiocten abyssicolum
    • Homalophiura nana (Lütken & Mortensen, 1899) H.L. Clark, 1915: 327 → Ophiura nana
    • Ophioderma bridgerensis Meek, 1873 original combination of Ophiura bridgerensis and of Ophioglypha bridgerensis, that last one wrongly stated as to be the original combination

sources to be merged https://marinespecies.org/aphia.php/aphia.php?p=sourcedetails&id=125353 → https://marinespecies.org/aphia.php?p=sourcedetails&id=139622

sources to be merged https://www.marinespecies.org/aphia.php?p=sourcedetails&id=47538 → https://www.marinespecies.org/aphia.php?p=sourcedetails&id=336562

sources to be merged https://www.marinespecies.org/aphia.php?p=sourcedetails&id=139312 → https://www.marinespecies.org/aphia.php?p=sourcedetails&id=278448

sources to be merged https://www.marinespecies.org/aphia.php?p=sourcedetails&id=410113 → https://www.marinespecies.org/aphia.php?p=sourcedetails&id=172357

    • †Calamocrinus ilimanangei Rasmussen, 1972
    • †Amphorometra ornata Rasmussen, 1972
    • †Astropecten granulatus Rasmussen, 1972 [junior homonym of Astropecten granulatus Müller & Troschel, 1842]
    • †Lophidiaster haunsbergensis Rasmussen, 1972
    • †Lophidiaster inversus Rasmussen, 1972
    • †Lophidiaster concavus Rasmussen, 1972
  • Ophiocoma granulata, Ophiocoma minuta, Ophiocoma rosula wrongly attributed to Forbes, 1839 → there are recombinations made by Forbes (1839: 127) of Ophiura granulata Fleming, 1828: 488, Ophiura rosula Fleming, 1828: 489 and Asterias minuta Pennant, 1777: 63

Echinodermata, articles to check

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Hayato Ikeda

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Austin Hobart Clark

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Hubert Lyman Clark

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Walter Kenrick Fisher

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Proceedings of the Linnean Society of New South Wales

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Bulletin of the National Science Museum. Series A: Zoology

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NIWA

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Zoosystema

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2021

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2022

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Zootaxa

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2007

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2009

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2010

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2011

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2012

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2013

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2014

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2015

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2016

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2017

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2018

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2019

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2020

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2021

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Zoosymposia

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2019

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The Australian zoologist

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Australian Museum

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1933

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Cover Acta Phytopathologica et Entomologica Hungarica Acta Phytopathologica et Entomologica Hungarica] some articles CC BY

Queries

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{{#invoke:WikidataIB |pageId }}

{{SPARQL| state=collapsed| embedded=yes| query=SELECT DISTINCT ?item ?itemLabel (YEAR(?date_de_publication) as ?year) ?wikispecies ?wikimediaCommons WHERE { SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],en". } { SELECT DISTINCT ?item WHERE { ?item p:P50 ?statement0. ?statement0 (ps:P50/(wdt:P279*)) wd:{{#invoke:WikidataIB |pageId }} } LIMIT 100 } OPTIONAL { ?wikispecies schema:about ?item ; schema:isPartOf <https://species.wikimedia.org/> } OPTIONAL { ?wikimediaCommons schema:about ?item ; schema:isPartOf <https://commons.wikimedia.org/> } OPTIONAL { ?item wdt:P577 ?date_de_publication. } } }}

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#genera of Echinodermata showing potential Wikispecies links and synonymy

SELECT DISTINCT ?item ?itemLabel ?rankLabel ?speciessitelink ?synonym ?synonymLabel
WHERE
{
  ?item wdt:P171+ wd:Q44631 .
  ?item wdt:P105 ?rank .
  ?item wdt:P105 wd:Q34740 .
  OPTIONAL { ?speciessitelink schema:about ?item ; schema:isPartOf <https://species.wikimedia.org/> . }
  OPTIONAL { ?item wdt:P1420 | ^wdt:P1420 ?synonym . }
  SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],en" . }
}
order by ?rankLabel ?itemLabel

Try it!

Same thing as above (+authors and first descrptions) but showing synonymy only for the item that are "taxon synonyms"

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#genera of Echinodermata showing potential: authors, fisrt description, Wikispecies links and synonymy (each should either have a link to wikispecies or be the synonym of another taxon)

SELECT DISTINCT ?item ?itemLabel ?author ?firstDescription ?speciesSitelink ?isSynonymOf ?isSynonymOfLabel
WHERE
{
  ?item wdt:P171+ wd:Q44631 .
  ?item wdt:P105 ?rank .
  ?item wdt:P105 wd:Q34740 .
  OPTIONAL { ?item p:P225 ?st . 
    ?st pq:P405 ?author . }
  OPTIONAL { ?item p:P225 ?statement .
    ?statement prov:wasDerivedFrom ?reference .
    ?reference pr:P248 ?firstDescription .
    ?reference pr:P6184 wd:Q1361864 . }
  OPTIONAL { ?speciesSitelink schema:about ?item ; schema:isPartOf <https://species.wikimedia.org/> . }
  OPTIONAL { ?item ^wdt:P1420 ?isSynonymOf . }
  SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],en" . }
}
order by ?itemLabel

Try it! 

SELECT * WHERE {
  ?item wdt:P105 wd:Q7432;
        wdt:P171+ wd:Q59256 .
  ?article schema:about ?item; schema:isPartOf <https://species.wikimedia.org/>; schema:name ?title .
}

Try it!

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#taxa with author, but no Wikispecies sitelink
#by Jura1, August 28, 2020


SELECT ?author ?authorLabel ?taxa ?count
WITH
{
  SELECT ?author
         (GROUP_CONCAT(DISTINCT ?taxon; separator=", ") as ?taxa)
         (COUNT(?taxon) as ?count)
  WHERE
  {
    ?st pq:P405 ?author .
    FILTER NOT EXISTS { [] schema:about ?author ; schema:isPartOf <https://species.wikimedia.org/> }
    ?st ps:P225 ?taxon .
  }
  GROUP BY ?author
} as %new
WHERE
{
  INCLUDE %new
  SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],en". }
}
ORDER BY DESC(?count)
LIMIT 100

Try it!

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#taxa of wd:Q59256 with author, but no Wikispecies sitelink
#by Jura1, August 29, 2020

SELECT ?author ?authorLabel ?taxa ?count
WITH
{
  SELECT ?author
         (GROUP_CONCAT(DISTINCT ?taxon; separator=", ") as ?taxa)
         (COUNT(?taxon) as ?count)
  WHERE
  {
    hint:Query hint:optimizer "None".
    ?taxonitem wdt:P171+ wd:Q59256 .
    ?taxonitem p:P225 ?st . 
    ?st pq:P405 ?author .
    FILTER NOT EXISTS { [] schema:about ?author ; schema:isPartOf <https://species.wikimedia.org/> }
    ?st ps:P225 ?taxon .
  }
  GROUP BY ?author
} as %new
WHERE
{
  INCLUDE %new
  SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],en". }
}
ORDER BY DESC(?count)
LIMIT 100

Try it!

All taxa with the same author (exemple with Theodore Lyman)

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#all taxa with the same author 
#by Jura1, Aug 29, 2020

SELECT (YEAR(?date) as ?year) ?taxonitem ?taxonitemLabel ?taxonitemDescription ?rank ?rankLabel ?img ?wikispecies
WHERE
{
    ?st pq:P405 wd:Q2418660 . 
    ?st ps:P225 ?taxon .
    ?taxonitem p:P225 ?st . 
    OPTIONAL { ?st pq:P574 ?date }
    OPTIONAL { ?taxonitem wdt:P105 ?rank }
    OPTIONAL { ?taxonitem wdt:P18 ?img }
    OPTIONAL { ?wikispecies schema:about ?taxonitem ; schema:isPartOf <https://species.wikimedia.org/> }
    SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],en". }
}

Try it!

Images in Wikimedia Commons depicting items of type specimens

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#Images in Wikimedia Commons depicting items of type specimens
#defaultView:ImageGrid

SELECT ?file ?image ?stype ?stypeLabel ?collec ?collecLabel ?role ?roleLabel ?de ?deLabel
with {
  select ?stype ?stypeLabel ?collec ?collecLabel ?role ?de ?roleLabel ?deLabel {
   service <https://query.wikidata.org/sparql> {
     select ?stype ?stypeLabel ?collec ?collecLabel ?role ?de ?roleLabel ?deLabel { 
       ?stype wdt:P31/wdt:P279* wd:Q51255340 
       SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],en". }
       optional {
         ?stype wdt:P195 ?collec .
       }
       ?stype p:P2868 [ps:P2868 ?role ; pq:P642 ?de] .
       #remove the # below to specify one or more collections
       #values ?collec {
       # wd:Q122945 # example with the Yale Peabody Museum of Natural History 
       #}
       #?de wdt:P171* wd:Q15711568 . # choose a taxon whose types are sought, including the types of its sub-taxa
     }
   }
  }
} as %types
WHERE {
  ?file wdt:P180 ?stype ; schema:contentUrl ?url .
  
  bind(iri(concat("http://commons.wikimedia.org/wiki/Special:FilePath/", replace(substr(str(?url),53),"_","%20"))) AS ?image) .
  
  #?file wdt:P180  wd:Q105607273  .
  include %types
}

Try it!

Stuff

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==List of treated taxa== {{subst:User:Christian Ferrer/sandbox2|Qxxxxx}}

to check :

Thetis Expedition: {{Whitelegge, 1906}} {{Whitelegge, 1907}} {{Clark, 1909a}}{{Stebbing, 1910a}} {{Clark, 1911a}} {{Thomson & Mackinnon, 1911}} {{Coleman, 1911}} {{Ritchie, 1911}}
to upload https://doi.org/10.15560/12.1.1836
[7]
  • Look at last image [8], not yet uploaded
  • How to display a specific page from a PDF:

[[File:Actes de la société d'histoire naturelle de Paris - tome premier, premiere partie (IA actesdelasociete1117soci).pdf|page=175|thumb]]

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